• add_branch() : ProbScan.cpp , ProbScan.h
• basestack() : ProbScan.cpp , ProbScan.h
• errmsg() : RNA.cpp
• hairpin() : ProbScan.cpp , ProbScan.h
• internal_loop() : ProbScan.cpp , ProbScan.h
• main() : Dynalign_class.cpp , DynalignSMP_class.cpp , OligoWalk_class.cpp , RNA_class.cpp , HybridRNA_class.cpp
• multibranch_loop() : ProbScan.h , ProbScan.cpp
• pow() : design.h
• prev_val() : ProbScan.cpp
• show_bulge_loops() : ProbScan.cpp , ProbScan.h
• show_hairpins() : ProbScan.h , ProbScan.cpp
• show_internal_loops() : ProbScan.cpp , ProbScan.h
• show_mb_element_array() : ProbScan.h , ProbScan.cpp
• show_mbl() : ProbScan.h , ProbScan.cpp
• show_stacks() : ProbScan.cpp , ProbScan.h