Here is a list of all file members with links to the files they belong to:

- a -

• add_branch() : ProbScan.cpp , ProbScan.h

- b -

• basestack() : ProbScan.cpp , ProbScan.h
• basestack_t : ProbScan.h

- c -

• COMPOUNDMESSAGELENGTH : TwoRNA.h

- d -

• DESIGN_H : design.h
• DYNALIGNOBJECT_H : Dynalign_object.h

- e -

• epsilon : RNA.cpp
• errmsg() : RNA.cpp
• EXTERIORCLOSENESS : design.cpp

- h -

• hairpin() : ProbScan.cpp , ProbScan.h
• hairpin_t : ProbScan.h
• HYBRIDRNA_H : HybridRNA.h

- i -

• inc : ProbScan.cpp
• internal_loop() : ProbScan.cpp , ProbScan.h
• internal_loop_t : ProbScan.h

- m -

• main() : Dynalign_class.cpp , DynalignSMP_class.cpp , OligoWalk_class.cpp , RNA_class.cpp , HybridRNA_class.cpp
• max_internal_loop : ProbScan.cpp
• MINIMUMLENGTH : design.cpp
• multibranch_loop() : ProbScan.h , ProbScan.cpp
• multibranch_loop_t : ProbScan.h
• MULTICLOSENESS : design.cpp

- o -

• OLIGOWALKOBJECT_H : Oligowalk_object.h

- p -

• pow() : design.h
• prev_val() : ProbScan.cpp

- r -

• RNA_H : RNA.h

- s -

• show_bulge_loops() : ProbScan.cpp , ProbScan.h
• show_hairpins() : ProbScan.h , ProbScan.cpp
• show_internal_loops() : ProbScan.cpp , ProbScan.h
• show_mb_element_array() : ProbScan.h , ProbScan.cpp
• show_mbl() : ProbScan.h , ProbScan.cpp
• show_stacks() : ProbScan.cpp , ProbScan.h

- t -

• THERMODYNAMICS_H : thermodynamics.h
• TOLERANCE : thermodynamics.h
• TWORNA_H : TwoRNA.h