Here is a list of all file members with links to the files they belong to:

- a -

• add_branch() : ProbScan.cpp , ProbScan.h

- b -

• BAD_RSAMPLE_FILE_MSG : RsampleData.cpp
• basestack() : ProbScan.cpp , ProbScan.h
• basestack_t : ProbScan.h

- c -

• COMPOUNDMESSAGELENGTH : TwoRNA.h

- e -

• epsilon : RNA.cpp
• equal_within_tolerance() : thermodynamics.cpp
• ERR_BAD_FILE_PE : RsampleData.cpp
• ERR_BAD_FILE_PM : RsampleData.cpp
• ERR_BAD_FILE_UU : RsampleData.cpp
• errmsg() : RNA.cpp
• EXTERIORCLOSENESS : design.cpp

- f -

• FILE_CT : RNA.h
• FILE_DBN : RNA.h
• file_exists() : Multilign_object.cpp
• FILE_PFS : RNA.h
• FILE_SAV : RNA.h
• FILE_SEQ : RNA.h

- h -

• hairpin() : ProbScan.cpp , ProbScan.h
• hairpin_t : ProbScan.h

- i -

• inc : ProbScan.cpp
• internal_loop() : ProbScan.cpp , ProbScan.h
• internal_loop_t : ProbScan.h
• isAlphabetRNA() : RNA.cpp

- m -

• main() : Dynalign_class.cpp , DynalignSMP_class.cpp , HybridRNA_class.cpp , OligoWalk_class.cpp , RNA_class.cpp
• max_internal_loop : ProbScan.cpp
• MINIMUMLENGTH : design.cpp
• multibranch_loop() : ProbScan.cpp , ProbScan.h
• multibranch_loop_t : ProbScan.h
• MULTICLOSENESS : design.cpp

- p -

• pow() : design.h
• prev_val() : ProbScan.cpp

- r -

• RNAInputType : RNA.h

- s -

• SEQUENCE_STRING : RNA.h
• show_bulge_loops() : ProbScan.cpp , ProbScan.h
• show_hairpins() : ProbScan.cpp , ProbScan.h
• show_internal_loops() : ProbScan.cpp , ProbScan.h
• show_mb_element_array() : ProbScan.cpp , ProbScan.h
• show_mbl() : ProbScan.cpp , ProbScan.h
• show_stacks() : ProbScan.cpp , ProbScan.h

- t -

• TOLERANCE : thermodynamics.h